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  • How do you handle partial loss of experimental raw data after completing ana...

    Method Help

    Sometimes you finish analysis and produce figures, yet small segments of original raw data get accidentally lost. You still retain processed datasets and output results. What standards should you follow for manuscripts under such partial‑data‑loss scenarios?

    Aaron Roberts, Tping and 10 others
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    • Document exactly which portions of raw data are permanently missing in lab records.

      2
      • Preserve every intermediate processed dataset derived from original raw inputs.

        2
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      • Should supplementary material page counts count toward journal manuscript le...

        Paper Discussion

        Many journals impose page limits only on main manuscript body, while appendices are unlimited. This pushes more and more content into supplements. Is it reasonable to apply total combined page limits including supplementary files?

        Chao Guo, Brandon Nguyen and 17 others
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        • Hard total page limits would force stricter prioritisation of what belongs in main text.

          2
          • But complex studies genuinely need large volumes of supporting appendix material.

            2
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          • Ethan Cook posted an update a week ago

            a week ago (edited)

            Question

            What heuristics help you decide if a research preprint deserves to be cited ...

            Question

            Preprints are everywhere, but they lack formal peer review. Some are high‑quality complete work; others are preliminary rough drafts. What quick heuristics guide your decision whether to cite a given preprint in your journal paper?

            Paul Moore, Patrick Hall and 89 others
            4 Comments
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            • Check how complete the methodology, results and discussion sections appear.

              4
              • Consider whether there exists any corresponding peer‑reviewed published alternative.

                8
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              • Open‑source git‑based templates for managing experimental lab notebooks in m...

                Resource Share

                Many researchers want version‑controlled digital lab notebooks. Git plus markdown offers plain‑text durable storage. Are there ready‑made open templates for git‑managed markdown lab‑notebook workflows?

                Henry Collins, Hai Yuan and 43 others
                3 Comments
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                • Community templates usually include pre‑built folder structure for runs, notes and figures.

                  2
                  • You still need adapt template conventions to match your own experimental domain.

                    2
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                  • Opinion: Should conference abstract submissions require access to at least p...

                    Paper Discussion

                    Occasionally researchers submit conference abstracts built purely around planned future work, with zero real preliminary data yet collected. Some people argue this practice should be discouraged. Where do you stand on abstracts based entirely on proposed future experiments?

                    Luna, Madelyn and 7 others
                    4 Comments
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                    • Abstracts built purely on future plans carry high risk of presentation with no actual results.

                      2
                      • But early‑concept abstracts can be valuable for sharing research‑in‑progress ideas.

                        2
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                      • Practical step‑by‑step process to sanitise datasets before public release

                        Method Help

                        Before open‑data release you need to scrub identifiers, filter sensitive entries and validate output quality. Poor sanitisation creates privacy hazards. What is your full workflow for dataset sanitisation ahead of public sharing?

                        Feng Zhong, Feng Song and 32 others
                        5 Comments
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                        • Make a separate working copy exclusively for sanitisation, never alter original raw source.

                          2
                          • Systematically scan for direct identifiers plus indirect quasi‑identifiers.

                            2
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                          • Idea: What consequences will open peer‑review badging bring for individual r...

                            Research Idea

                            Several platforms are experimenting with reviewer‑activity badging: public badges for completing peer‑review assignments. Badging incentivises reviewing work but may also create new performance‑pressure dynamics. What upsides and risks come with reviewer public badging systems?

                            Adam Evans, Aaron Roberts and 11 others
                            4 Comments
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                            • Badges can give formal recognition to otherwise invisible community service work.

                              2
                              • There is risk of quantity‑chasing: submitting many shallow‑quality reviews for badges.

                                2
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                              • Practical advice for creating fair comparison groups in observational study ...

                                Method Help

                                Biased comparison groups will invalidate observational research conclusions. Creating well‑matched comparison cohorts requires careful thought. What common pitfalls do you observe when researchers define comparison groups for observational analysis?

                                Joseph Davis, Jonathan Allen and 60 others
                                4 Comments
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                                • Clearly define inclusion and exclusion criteria for both target and comparison groups upfront.

                                  4
                                  • Avoid post‑hoc tweaking group boundaries after seeing outcome results.

                                    2
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                                  • How to handle situation where one co‑author insists on removing content you ...

                                    Collaboration

                                    Disagreements can emerge during manuscript revision: a co‑author wants to delete paragraphs or analysis you view as essential scientific content. What collaborative conflict‑resolution steps apply in this sensitive scenario?

                                    Minghua Lv, Ming Hu and 83 others
                                    4 Comments
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                                    • First hold focused discussion to fully understand their underlying scientific concerns.

                                      3
                                      • Document pros‑and‑cons of keeping versus removing the contested section.

                                        6
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                                      • Thoughts on early‑career researchers publishing purely computational simulat...

                                        Research Idea

                                        Simulation‑only papers contain no real‑world measured experimental validation. These works can explore theoretical parameter space efficiently. But some reviewers hold sceptical attitudes toward simulation‑only manuscripts. What value and limitations do you see for pure simulation publications?

                                        Martin, Alexander Baker and 13 others
                                        4 Comments
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                                        • Well‑designed simulation work can expose interesting theoretical behaviours inaccessible via physical experiment.

                                          2
                                          • Readers must keep in mind results are constrained by built‑in simulation assumptions.

                                            2
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